MolNFT v1 · #113258 · protein

Structure of gdpcp bipa

5A9W · GTP-binding protein: “Structure of gdpcp bipa”. X-ray diffraction, 1 ligand (GCP), 8 pockets (best druggability 0.62). MolNFT v1 #113258 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5A9W
Type: protein
Length: 567 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: GTP-binding protein
UniProt: B7MHF0
Ligands: GCP
Pockets: 8 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GTP-binding protein	protein	567	20% helix, 26% strand	B7MHF0

Ligands and binding sites

GCP · Phosphomethylphosphonic acid guanylate ester · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	201	0.62	0.83	28	empty
2	231	0.60	0.80	40	empty
3	253	0.57	0.78	32	empty
4	89	0.43	0.79	22	empty
5	61	0.38	0.79	17	empty

Compared structures

5A9W · Structure of GDPCP BipA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B7MHF0
Elsewhere: RCSB PDB 5A9W · PDBe 5A9W · UniProt B7MHF0

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