MolNFT v1 · #11324 · protein
Crystal structure of the C-terminal ATPase domain of human TAP1
1JJ7 · Peptide transporter TAP1: “Crystal structure of the C-terminal ATPase domain of human TAP1”. X-ray diffraction, 2 ligands (ADP, MG), 1 pocket (best druggability 0.47). MolNFT v1 #11324 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1JJ7
- Type
- protein
- Length
- 251 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide transporter TAP1
- UniProt
- Q03518
- Ligands
- ADP, MG
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide transporter TAP1 | protein | 251 | 36% helix, 24% strand | Q03518 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 145 | 0.47 | 0.77 | 27 | empty |
Compared structures
- 1JJ7 · Crystal Structure of the C-terminal ATPase domain of human TAP1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q03518 · AlphaFold monomer V2.0 prediction for antigen peptide transporter 1 (Q03518) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03518
- Elsewhere: RCSB PDB 1JJ7 · PDBe 1JJ7 · UniProt Q03518
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