MolNFT v1 · #113224 · protein

Crystal structure of orgyia pseudotsugata CPV5 polyhedra

5A8U · Polyhedrin: “Crystal structure of orgyia pseudotsugata CPV5 polyhedra”. X-ray diffraction, 1 ligand (ACE), 3 pockets (best druggability 0.54). MolNFT v1 #113224 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5A8U
Type: protein
Length: 252 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyhedrin
UniProt: P36701
Ligands: ACE
Pockets: 3 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyhedrin	protein	252	25% helix, 28% strand	P36701

Ligands and binding sites

ACE · Acetyl group · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	73	0.54	0.86	17	empty
2	204	0.49	0.76	24	empty
3	69	0.30	0.74	16	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

5A8U · Crystal structure of Orgyia pseudotsugata CPV5 polyhedra · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36701
Elsewhere: RCSB PDB 5A8U · PDBe 5A8U · UniProt P36701

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