MolNFT v1 · #113104 · protein

A complex of the synthetic siderophore analogue FE(III)-5-licam with the ceue periplasmic protein from campylobacter jejuni

5A5D · Enterochelin uptake periplasmic binding protein: “A complex of the synthetic siderophore analogue FE(III)-5-licam with the ceue periplasmic protein from…”. X-ray diffraction, 2 ligands (5LC, FE), 1 pocket (best druggability 0.58).…

PDB: 5A5D
Type: protein
Length: 289 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Enterochelin uptake periplasmic binding protein
UniProt: Q0P8Q4
Ligands: 5LC, FE
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Enterochelin uptake periplasmic binding protein	protein	289	44% helix, 22% strand	Q0P8Q4

Ligands and binding sites

5LC · N,N'-pentane-1,5-diylbis(2,3-dihydroxybenzamide) · ligand · chains A
FE · Fe (III) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	179	0.58	0.81	35	empty

Compared structures

5A5D · A complex of the synthetic siderophore analogue Fe(III)-5-LICAM with the CeuE periplasmic… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0P8Q4
Elsewhere: RCSB PDB 5A5D · PDBe 5A5D · UniProt Q0P8Q4

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