MolNFT v1 · #113054 · protein
Crystal structure of the chloroplastic gamma-ketol reductase from arabidopsis thaliana
5A3V · Putative quinone-oxidoreductase homolog, chloroplastic: “Crystal structure of the chloroplastic gamma-ketol reductase from arabidopsis thaliana”. X-ray diffraction, 6 pockets (best druggability 0.78). MolNFT v1 #113054 on GenesisL1…
- PDB
- 5A3V
- Type
- protein
- Length
- 653 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative quinone-oxidoreductase homolog, chloroplastic
- EC
- 1.-.-.-
- UniProt
- Q9SV68
- Pockets
- 6 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative quinone-oxidoreductase homolog, chloroplastic (EC 1.-.-.-) | protein | 326 | 32% helix, 29% strand | Q9SV68 |
| B | Putative quinone-oxidoreductase homolog, chloroplastic (EC 1.-.-.-) | protein | 327 | 32% helix, 29% strand | Q9SV68 |
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 590 | 0.78 | 0.84 | 79 | empty |
| 2 | 514 | 0.78 | 0.85 | 63 | empty |
| 3 | 226 | 0.54 | 0.77 | 37 | empty |
| 4 | 315 | 0.53 | 0.74 | 41 | empty |
| 5 | 216 | 0.53 | 0.77 | 36 | empty |
Interfaces
1 interface between chains.
- A–B · 1231 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5A3V · Crystal structure of the chloroplastic gamma-ketol reductase from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SV68 · AlphaFold monomer V2.0 prediction for chloroplast envelope quinone oxidoreductase homolog… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SV68
- Elsewhere: RCSB PDB 5A3V · PDBe 5A3V · UniProt Q9SV68
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