MolNFT v1 · #113002 · protein

Two membrane distal igsf domains of CD166

5A2F · CD166 antigen: “Two membrane distal igsf domains of CD166”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #113002 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5A2F
Type: protein
Length: 218 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CD166 antigen
UniProt: Q13740
Ligands: NAG

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 56% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CD166 antigen	protein	218	4% helix, 56% strand	Q13740

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 16 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide, 2 glycan (disulfide, N-glycosylation).

Compared structures

5A2F · Two membrane distal IgSF domains of CD166 · the same entry in another collection · chain A against A, TM-score 1.00
Q13740 · AlphaFold monomer V2.0 prediction for CD166 antigen (Q13740) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13740
Elsewhere: RCSB PDB 5A2F · PDBe 5A2F · UniProt Q13740

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