MolNFT v1 · #112942 · protein
N-terminal thioester domain of fibronectin-binding protein sfbi from streptococcus pyogenes
5A0L: “N-terminal thioester domain of fibronectin-binding protein sfbi from streptococcus pyogenes”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.38). MolNFT v1 #112942 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5A0L
- Type
- protein
- Length
- 410 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fibronectin-binding protein
- UniProt
- Q1JDZ6
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fibronectin-binding protein | protein | 205 | 31% helix, 16% strand | Q1JDZ6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.38 | 0.76 | 19 | empty |
| 2 | 99 | 0.35 | 0.74 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 316 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5A0L · N-terminal thioester domain of fibronectin-binding protein SfbI from Streptococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1JDZ6
- Elsewhere: RCSB PDB 5A0L · PDBe 5A0L · UniProt Q1JDZ6
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