MolNFT v1 · #112841 · protein
Crystal structure of pgrp domain from branchiostoma belcheri tsingtauense peptidoglycan recognition protein 3
4ZXM · Pgrp domain of peptidoglycan recognition protein 3: “Crystal structure of pgrp domain from branchiostoma belcheri tsingtauense peptidoglycan recognition protein 3”. X-ray diffraction, 1 pocket (best druggability 0.33). MolNFT v1…
- PDB
- 4ZXM
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pgrp domain of peptidoglycan recognition protein 3
- EC
- 3.5.1.28
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pgrp domain of peptidoglycan recognition protein 3 (EC 3.5.1.28) | protein | 165 | 33% helix, 21% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.33 | 0.76 | 22 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 4ZXM · Crystal structure of PGRP domain from Branchiostoma belcheri tsingtauense peptidoglycan… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4ZXM · PDBe 4ZXM
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