MolNFT v1 · #112597 · protein

Structure of N170A mvm mutant empty capsid

4ZPY · VP1 protein: “Structure of N170A mvm mutant empty capsid”. X-ray diffraction, 9 pockets (best druggability 0.56). MolNFT v1 #112597 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4ZPY
Type: protein
Length: 549 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: VP1 protein
UniProt: Q84367
Pockets: 9 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	VP1 protein	protein	549	6% helix, 25% strand	Q84367

Pockets

9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	405	0.56	0.74	39	empty
2	221	0.55	0.78	35	empty
3	91	0.53	0.84	22	empty
4	185	0.51	0.77	43	empty
5	158	0.43	0.74	20	empty

Compared structures

4ZPY · Structure of N170A MVM mutant empty capsid · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q84367
Elsewhere: RCSB PDB 4ZPY · PDBe 4ZPY · UniProt Q84367

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