MolNFT v1 · #112582 · protein
ABC transporter substrate-binding protein from sphaerobacter thermophilus
4ZPJ · Extracellular ligand-binding receptor: “ABC transporter substrate-binding protein from sphaerobacter thermophilus”. X-ray diffraction, 2 ligands (ZN, CL), 1 pocket (best druggability 0.66). MolNFT v1 #112582 on GenesisL1: 3D…
- PDB
- 4ZPJ
- Type
- protein
- Length
- 371 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular ligand-binding receptor
- UniProt
- D1C6A8
- Ligands
- ZN, CL
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular ligand-binding receptor | protein | 371 | 41% helix, 24% strand | D1C6A8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 312 | 0.66 | 0.81 | 49 | CL |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 4ZPJ · ABC transporter substrate-binding protein from Sphaerobacter thermophilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1C6A8
- Elsewhere: RCSB PDB 4ZPJ · PDBe 4ZPJ · UniProt D1C6A8
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