MolNFT v1 · #112544 · protein

Crystal structure of beta-glucosidase from listeria innocua

4ZOE · LIN1840 protein: “Crystal structure of beta-glucosidase from listeria innocua”. X-ray diffraction, 1 ligand (MG), 17 pockets (best druggability 0.87). MolNFT v1 #112544 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4ZOE
Type: protein
Length: 1,448 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LIN1840 protein
UniProt: Q92AS9
Ligands: MG
Pockets: 17 · best druggability 0.87

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	LIN1840 protein	protein	724	35% helix, 19% strand	Q92AS9

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

17 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	455	0.87	0.94	72	GOL
2	333	0.68	0.82	37	empty
3	354	0.67	0.81	49	empty
4	294	0.66	0.82	34	empty
5	229	0.60	0.81	31	empty

Interfaces

1 interface between chains.

A–B · 3105 Å² buried · 75 hydrogen bonds · protein-protein

Compared structures

4ZOE · Crystal Structure of beta-glucosidase from Listeria innocua · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q92AS9
Elsewhere: RCSB PDB 4ZOE · PDBe 4ZOE · UniProt Q92AS9

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