MolNFT v1 · #11238 · DNA

Crystal structure analysis of the B-DNA dodecamer cgcgaattcgcg with thallium ions.

1JGR · 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3': “Crystal structure analysis of the B-DNA dodecamer cgcgaattcgcg with thallium ions.”. X-ray diffraction, 2 ligands (TL, MG). MolNFT v1 #11238 on GenesisL1: 3D structure, binding sites…

PDB: 1JGR
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'
Ligands: TL, MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'	dna	12	—	—

Ligands and binding sites

TL · Thallium (I) ion · metal · 13 copies · chains A, B
MG · Magnesium ion · metal · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 568 Å² buried · 44 hydrogen bonds · nucleic-nucleic

Compared structures

1JGR · Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATTCGCG with Thallium Ions. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1JGR · PDBe 1JGR

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