MolNFT v1 · #112317 · protein
The crystal structure of arabidopsis ferredoxin 2 with 2FE-2S cluster
4ZHO · Ferredoxin-2, chloroplastic: “The crystal structure of arabidopsis ferredoxin 2 with 2FE-2S cluster”. X-ray diffraction, 2 ligands (FES, CL), 1 pocket (best druggability 0.26). MolNFT v1 #112317 on GenesisL1: 3D structure, binding…
- PDB
- 4ZHO
- Type
- protein
- Length
- 194 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin-2, chloroplastic
- UniProt
- P16972
- Ligands
- FES, CL
- Pockets
- 1 · best druggability 0.26
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ferredoxin-2, chloroplastic | protein | 97 | 21% helix, 33% strand | P16972 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.26 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 458 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 4ZHO · The crystal structure of Arabidopsis ferredoxin 2 with 2Fe-2S cluster · the same entry in another collection · chain A against A, TM-score 1.00
- P16972 · AlphaFold monomer V2.0 prediction for ferredoxin-2, chloroplastic (P16972) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16972
- Elsewhere: RCSB PDB 4ZHO · PDBe 4ZHO · UniProt P16972
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