MolNFT v1 · #112307 · protein
Crystal structure of the semet substituted topless related protein 2 (TPR2) N-terminal domain (1-209) from rice
4ZHE · ASPR2 protein: “Crystal structure of the semet substituted topless related protein 2 (TPR2) N-terminal domain (1-209) from…”. X-ray diffraction, 14 pockets (best druggability 0.49). MolNFT v1 #112307 on GenesisL1: 3D structure…
- PDB
- 4ZHE
- Type
- protein
- Length
- 813 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ASPR2 protein
- UniProt
- Q5NBT9
- Pockets
- 14 · best druggability 0.49
Structure
x-ray diffraction · 4 distinct chains · 64% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ASPR2 protein | protein | 205 | 64% helix, 0% strand | Q5NBT9 |
| B | ASPR2 protein | protein | 203 | 63% helix, 0% strand | Q5NBT9 |
| C | ASPR2 protein | protein | 199 | 65% helix, 0% strand | Q5NBT9 |
| D | ASPR2 protein | protein | 206 | 63% helix, 0% strand | Q5NBT9 |
Pockets
14 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.49 | 0.77 | 21 | empty |
| 2 | 66 | 0.41 | 0.80 | 10 | empty |
| 3 | 73 | 0.39 | 0.78 | 12 | empty |
| 4 | 81 | 0.38 | 0.77 | 11 | empty |
| 5 | 88 | 0.37 | 0.76 | 15 | empty |
Interfaces
4 interfaces between chains.
- B–C · 2024 Ų buried · 46 hydrogen bonds · protein-protein
- A–D · 2014 Ų buried · 47 hydrogen bonds · protein-protein
- A–B · 671 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 636 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 4ZHE · Crystal structure of the SeMet substituted Topless related protein 2 (TPR2) N-terminal… · the same entry in another collection · chain C against C, TM-score 1.00
- Q5NBT9 · AlphaFold monomer V2.0 prediction for protein TPR1 (Q5NBT9) · a predicted model of the same protein · chain C against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5NBT9
- Elsewhere: RCSB PDB 4ZHE · PDBe 4ZHE · UniProt Q5NBT9
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