MolNFT v1 · #112293 · protein
Structure of helicobacter pylori adhesin baba determined by semet sad
4ZH0 · Outer membrane protein-adhesin: “Structure of helicobacter pylori adhesin baba determined by semet sad”. X-ray diffraction, 4 pockets (best druggability 0.48). MolNFT v1 #112293 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 4ZH0
- Type
- protein
- Length
- 486 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein-adhesin
- UniProt
- Q9ZKV2
- Pockets
- 4 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane protein-adhesin | protein | 486 | 51% helix, 17% strand | Q9ZKV2 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 184 | 0.48 | 0.76 | 31 | empty |
| 2 | 71 | 0.34 | 0.76 | 15 | empty |
| 3 | 67 | 0.33 | 0.75 | 19 | empty |
| 4 | 56 | 0.33 | 0.77 | 14 | empty |
Modifications
Observed in the structure: 4 disulfide, 4 modified (disulfide, engineered).
Compared structures
- 4ZH0 · Structure of Helicobacter pylori adhesin BabA determined by SeMet SAD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZKV2
- Elsewhere: RCSB PDB 4ZH0 · PDBe 4ZH0 · UniProt Q9ZKV2
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