MolNFT v1 · #112248 · protein

A new crystal structure for the adduct formed in the reaction between AUSAC2, a cytotoxic homoleptic GOLD(I) compound with the saccharinate ligand, and the model protein hen egg white lysozyme

4ZFP · Lysozyme C: “A new crystal structure for the adduct formed in the reaction between AUSAC2, a cytotoxic homoleptic GOLD(I)…”. X-ray diffraction, 2 ligands (AU, NO3), 1 pocket (best druggability 0.32). MolNFT v1 #112248 on GenesisL1…

PDB: 4ZFP
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme C
EC: 3.2.1.17
UniProt: P00698
Ligands: AU, NO3
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme C (EC 3.2.1.17)	protein	129	41% helix, 11% strand	P00698

Ligands and binding sites

AU · Gold ion · metal · 3 copies · chains A
NO3 · Nitrate ion · ion · 6 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	62	0.32	0.76	16	EDO

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

4ZFP · A new crystal structure for the adduct formed in the reaction between AuSac2, a cytotoxic… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00698
Elsewhere: RCSB PDB 4ZFP · PDBe 4ZFP · UniProt P00698

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