MolNFT v1 · #112099 · protein
Ubix in complex with a covalent adduct between dimethylallyl monophosphate and reduced FMN
4ZAV: “Ubix in complex with a covalent adduct between dimethylallyl monophosphate and reduced FMN”. X-ray diffraction, 4 ligands (4LS, NA, SCN). MolNFT v1 #112099 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4ZAV
- Type
- protein
- Length
- 208 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubix
- EC
- 4.1.1.-
- UniProt
- Q9HX08
- Ligands
- 4LS, NA, SCN, PO4
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubix (EC 4.1.1.-) | protein | 208 | 42% helix, 14% strand | Q9HX08 |
Ligands and binding sites
- 4LS · 1-deoxy-1-[7,8-dimethyl-5-(3-methylbut-2-en-1-yl)-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol · ligand · chains A
- NA · Sodium ion · metal · chains A
- SCN · Thiocyanate ion · ion · 4 copies · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4ZAV · UbiX in complex with a covalent adduct between dimethylallyl monophosphate and reduced FMN · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HX08 · AlphaFold monomer V2.0 prediction for flavin prenyltransferase ubix (Q9HX08) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HX08
- Elsewhere: RCSB PDB 4ZAV · PDBe 4ZAV · UniProt Q9HX08
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