MolNFT v1 · #112070 · protein

Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from streptococcus pyogenes

4Z9X · Gluconate 5-dehydrogenase: “Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from streptococcus pyogenes”. X-ray diffraction, 1 pocket (best druggability 0.72). MolNFT v1 #112070 on GenesisL1: 3D structure, binding…

PDB: 4Z9X
Type: protein
Length: 257 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gluconate 5-dehydrogenase
EC: 1.1.1.127
UniProt: Q9A0T1
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gluconate 5-dehydrogenase (EC 1.1.1.127)	protein	257	51% helix, 15% strand	Q9A0T1

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	589	0.72	0.80	48	empty

Compared structures

4Z9X · Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus pyogenes · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9A0T1
Elsewhere: RCSB PDB 4Z9X · PDBe 4Z9X · UniProt Q9A0T1

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