MolNFT v1 · #112053 · protein
Alba from thermoplasma volcanium
4Z9E · DNA/RNA-binding protein alba: “Alba from thermoplasma volcanium”. X-ray diffraction, 4 pockets (best druggability 0.49). MolNFT v1 #112053 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4Z9E
- Type
- protein
- Length
- 340 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA/RNA-binding protein alba
- UniProt
- Q979S5
- Pockets
- 4 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA/RNA-binding protein alba | protein | 85 | 35% helix, 34% strand | Q979S5 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 191 | 0.49 | 0.76 | 31 | empty |
| 2 | 83 | 0.40 | 0.78 | 15 | empty |
| 3 | 70 | 0.35 | 0.76 | 13 | empty |
| 4 | 87 | 0.34 | 0.75 | 20 | empty |
Interfaces
5 interfaces between chains.
- A–B · 743 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 723 Ų buried · 14 hydrogen bonds · protein-protein
- B–D · 220 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 209 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 169 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q979S5
- Elsewhere: RCSB PDB 4Z9E · PDBe 4Z9E · UniProt Q979S5
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