MolNFT v1 · #111935 · protein

Crystal structure of mhv NS2 pde domain

4Z5V · Non-structural protein 2A: “Crystal structure of mhv NS2 pde domain”. X-ray diffraction, 3 pockets (best druggability 0.54). MolNFT v1 #111935 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4Z5V
Type: protein
Length: 309 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Non-structural protein 2A
UniProt: P19738
Pockets: 3 · best druggability 0.54

Structure

x-ray diffraction · 2 distinct chains · 31% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Non-structural protein 2A	protein	161	28% helix, 34% strand	P19738
B	Non-structural protein 2A	protein	148	34% helix, 34% strand	P19738

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	152	0.54	0.81	29	empty
2	157	0.53	0.79	21	empty
3	134	0.45	0.77	19	empty

Interfaces

1 interface between chains.

A–B · 429 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

4Z5V · Crystal Structure of MHV ns2 PDE Domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19738
Elsewhere: RCSB PDB 4Z5V · PDBe 4Z5V · UniProt P19738

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