MolNFT v1 · #111931 · protein
Crystal structure of the lnmz cytochrome P450 hydroxylase from the leinamycin biosynthetic pathway of streptomyces atroolivaceus S-140 at 1.8 a resolution
4Z5Q: “Crystal structure of the lnmz cytochrome P450 hydroxylase from the leinamycin biosynthetic pathway of…”. X-ray diffraction, 3 ligands (HEM, MG, CL), 2 pockets (best druggability 0.78). MolNFT v1 #111931 on GenesisL1: 3D structure…
- PDB
- 4Z5Q
- Type
- protein
- Length
- 363 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome P450 hydroxylase
- UniProt
- Q8GGM6
- Ligands
- HEM, MG, CL
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome P450 hydroxylase | protein | 363 | 54% helix, 10% strand | Q8GGM6 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- P33 · 3,6,9,12,15,18-hexaoxaicosane-1,20-diol · additive · chains A
- 1PE · Pentaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1151 | 0.78 | 0.79 | 76 | HEM, P33 |
| 2 | 80 | 0.36 | 0.76 | 13 | empty |
Compared structures
- 4Z5Q · Crystal structure of the LnmZ cytochrome P450 hydroxylase from the leinamycin… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8GGM6
- Elsewhere: RCSB PDB 4Z5Q · PDBe 4Z5Q · UniProt Q8GGM6
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