MolNFT v1 · #111876 · protein
Crystal structure of the mate transporter clbm
4Z3N · Putative DRUG/SODIUM antiporter: “Crystal structure of the mate transporter clbm”. X-ray diffraction, 4 pockets (best druggability 0.86). MolNFT v1 #111876 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4Z3N
- Type
- protein
- Length
- 431 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative DRUG/SODIUM antiporter
- UniProt
- Q0P7K3
- Pockets
- 4 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 85% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative DRUG/SODIUM antiporter | protein | 431 | 85% helix, 0% strand | Q0P7K3 |
Ligands and binding sites
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 7 copies · chains A
- CAC · Cacodylate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1022 | 0.86 | 0.86 | 82 | OLC |
| 2 | 92 | 0.40 | 0.77 | 17 | empty |
| 3 | 96 | 0.38 | 0.75 | 17 | empty |
| 4 | 76 | 0.34 | 0.74 | 13 | empty |
Compared structures
- 4Z3N · Crystal structure of the MATE transporter ClbM · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0P7K3
- Elsewhere: RCSB PDB 4Z3N · PDBe 4Z3N · UniProt Q0P7K3
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