MolNFT v1 · #11185 · protein

Crystal structure of component III glycera dibranchiata monomeric hemoglobin

1JF3 · Monomer hemoglobin component III: “Crystal structure of component III glycera dibranchiata monomeric hemoglobin”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.72). MolNFT v1 #11185 on GenesisL1: 3D structure…

PDB: 1JF3
Type: protein
Length: 147 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Monomer hemoglobin component III
UniProt: P02216
Ligands: HEM
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Monomer hemoglobin component III	protein	147	76% helix, 0% strand	P02216

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	246	0.72	0.86	32	HEM

Compared structures

1JF3 · Crystal Structure Of Component III Glycera Dibranchiata Monomeric Hemoglobin · the same entry in another collection · chain A against A, TM-score 1.00
P02216 · AlphaFold monomer V2.0 prediction for globin, major monomeric component (P02216) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02216
Elsewhere: RCSB PDB 1JF3 · PDBe 1JF3 · UniProt P02216

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