MolNFT v1 · #111720 · protein
Crystal structure of MYC3[44-238] from arabidopsis in complex with JAZ1 peptide [200-221]
4YZ6 · Transcription factor MYC3: “Crystal structure of MYC3[44-238] from arabidopsis in complex with JAZ1 peptide [200-221]”. X-ray diffraction, 1 pocket (best druggability 0.35). MolNFT v1 #111720 on GenesisL1: 3D structure, binding…
- PDB
- 4YZ6
- Type
- protein
- Length
- 193 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription factor MYC3; Protein tify 10A
- UniProt
- Q9FIP9, Q9LMA8
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcription factor MYC3 | protein | 175 | 42% helix, 26% strand | Q9FIP9 |
| B | Protein tify 10A | protein | 18 | 78% helix, 0% strand | Q9LMA8 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.35 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 816 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4YZ6 · Crystal Structure of Myc3[44-238] from Arabidopsis in complex with Jaz1 peptide [200-221] · the same entry in another collection · chain A against A, TM-score 1.00
- Q9FIP9 · AlphaFold monomer V2.0 prediction for transcription factor MYC3 (Q9FIP9) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q9LMA8 · AlphaFold monomer V2.0 prediction for protein tify 10A (Q9LMA8) · a predicted model of the same protein · chain B against A, TM-score 0.69
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FIP9
- Every structure of UniProt Q9LMA8
- Elsewhere: RCSB PDB 4YZ6 · PDBe 4YZ6 · UniProt Q9FIP9 · UniProt Q9LMA8
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