MolNFT v1 · #111708 · protein
Ficin C crystal form I
4YYU · Ficin isoform C: “Ficin C crystal form I”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.28). MolNFT v1 #111708 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4YYU
- Type
- protein
- Length
- 220 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ficin isoform C
- EC
- 3.4.22.3
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ficin isoform C (EC 3.4.22.3) | protein | 220 | 27% helix, 22% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.28 | 0.74 | 18 | empty |
Modifications
Observed in the structure: 3 disulfide, 1 modified (disulfide, methylation).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4YYU · PDBe 4YYU
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