MolNFT v1 · #111686 · protein

Crystal structure analysis of kelch protein from plasmodium falciparum

4YY8: “Crystal structure analysis of kelch protein from plasmodium falciparum”. X-ray diffraction, 1 ligand (UNX), 9 pockets (best druggability 0.77). MolNFT v1 #111686 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4YY8
Type: protein
Length: 750 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kelch protein
UniProt: A0A077LQB4
Ligands: UNX
Pockets: 9 · best druggability 0.77

Structure

x-ray diffraction · 2 distinct chains · 10% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kelch protein	protein	373	10% helix, 40% strand	A0A077LQB4
B	Kelch protein	protein	377	10% helix, 42% strand	A0A077LQB4

Ligands and binding sites

UNX · Unknown atom or ion · ion · 30 copies · chains A, B
GOL · Glycerol · additive · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	581	0.77	0.84	52	UNX
2	500	0.77	0.85	43	UNX
3	709	0.69	0.77	62	empty
4	106	0.42	0.77	21	empty
5	77	0.42	0.80	16	GOL

Interfaces

1 interface between chains.

A–B · 1547 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

4YY8 · Crystal Structure Analysis of Kelch protein from Plasmodium falciparum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A077LQB4
Elsewhere: RCSB PDB 4YY8 · PDBe 4YY8 · UniProt A0A077LQB4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.