MolNFT v1 · #11167 · protein
Visna tm core structure
1JEK · Env polyprotein: “Visna tm core structure”. X-ray diffraction, 2 ligands (ACE, NH2). MolNFT v1 #11167 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JEK
- Type
- protein
- Length
- 74 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Env polyprotein
- UniProt
- P35954
- Ligands
- ACE, NH2
Structure
x-ray diffraction · 2 distinct chains · 95% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Env polyprotein | protein | 40 | 95% helix, 0% strand | P35954 |
| B | Env polyprotein | protein | 34 | 94% helix, 0% strand | P35954 |
Ligands and binding sites
- ACE · Acetyl group · ligand · 2 copies · chains A, B
- NH2 · Amino group · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 786 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 1JEK · Visna TM CORE STRUCTURE · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35954
- Elsewhere: RCSB PDB 1JEK · PDBe 1JEK · UniProt P35954
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