MolNFT v1 · #11154 · protein
Structure of the MHC class I homolog micb
1JE6 · MHC class I chain-related protein: “Structure of the MHC class I homolog micb”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.55). MolNFT v1 #11154 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JE6
- Type
- protein
- Length
- 275 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MHC class I chain-related protein
- UniProt
- P79525
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MHC class I chain-related protein | protein | 275 | 25% helix, 41% strand | P79525 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.55 | 0.78 | 35 | empty |
| 2 | 76 | 0.54 | 0.86 | 22 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1JE6 · Structure of the MHC Class I Homolog MICB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P79525
- Elsewhere: RCSB PDB 1JE6 · PDBe 1JE6 · UniProt P79525
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