MolNFT v1 · #111534 · protein

Structure of coiled-coil domain of SYCP1

4YTO · Synaptonemal complex protein 1: “Structure of coiled-coil domain of SYCP1”. X-ray diffraction. MolNFT v1 #111534 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4YTO
Type: protein
Length: 192 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Synaptonemal complex protein 1
UniProt: Q15431

Structure

x-ray diffraction · 2 distinct chains · 94% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Synaptonemal complex protein 1	protein	95	95% helix, 0% strand	Q15431
B	Synaptonemal complex protein 1	protein	97	94% helix, 0% strand	Q15431

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1966 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

4YTO · Structure of coiled-coil domain of SYCP1 · the same entry in another collection · chain A against A, TM-score 1.00
Q15431 · AlphaFold monomer V2.0 prediction for synaptonemal complex protein 1 (Q15431) · a predicted model of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q15431
Elsewhere: RCSB PDB 4YTO · PDBe 4YTO · UniProt Q15431

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