MolNFT v1 · #111530 · protein
Structure of the KOW1-LINKER1 domain of transcription elongation factor SPT5
4YTK: “Structure of the KOW1-LINKER1 domain of transcription elongation factor SPT5”. X-ray diffraction, 1 pocket (best druggability 0.42). MolNFT v1 #111530 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4YTK
- Type
- protein
- Length
- 116 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription elongation factor SPT5
- UniProt
- P27692
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcription elongation factor SPT5 | protein | 116 | 20% helix, 34% strand | P27692 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.42 | 0.74 | 24 | empty |
Compared structures
- 4YTK · Structure of the KOW1-Linker1 domain of Transcription Elongation Factor Spt5 · the same entry in another collection · chain A against A, TM-score 1.00
- P27692 · AlphaFold monomer V2.0 prediction for transcription elongation factor SPT5 (P27692) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27692
- Elsewhere: RCSB PDB 4YTK · PDBe 4YTK · UniProt P27692
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.