MolNFT v1 · #111341 · protein

Structure of legionella pneumophila degq (delta PDZ2 variant)

4YO1: “Structure of legionella pneumophila degq (delta PDZ2 variant)”. X-ray diffraction, 1 ligand (CD), 1 pocket (best druggability 0.33). MolNFT v1 #111341 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4YO1
Type: protein
Length: 276 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Degq
EC: 3.4.21.-
UniProt: Q5ZVV9
Ligands: CD
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Degq (EC 3.4.21.-)	protein	276	14% helix, 40% strand	Q5ZVV9

Ligands and binding sites

CD · Cadmium ion · metal · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.33	0.74	17	empty

Compared structures

4YO1 · Structure of Legionella pneumophila DegQ (delta PDZ2 variant) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5ZVV9
Elsewhere: RCSB PDB 4YO1 · PDBe 4YO1 · UniProt Q5ZVV9

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