MolNFT v1 · #111261 · protein

Structure of pvcb, an fe, alpha-ketoglutarate dependent oxygenase from an isonitrile synthetic pathway

4YLM · Pyoverdine biosynthesis protein pvcb: “Structure of pvcb, an fe, alpha-ketoglutarate dependent oxygenase from an isonitrile synthetic pathway”. X-ray diffraction, 1 pocket (best druggability 0.54). MolNFT v1 #111261 on GenesisL1: 3D…

PDB: 4YLM
Type: protein
Length: 274 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pyoverdine biosynthesis protein pvcb
UniProt: S0I3V6
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Pyoverdine biosynthesis protein pvcb	protein	274	20% helix, 35% strand	S0I3V6

Ligands and binding sites

GOL · Glycerol · additive · 3 copies · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	279	0.54	0.75	33	empty

Compared structures

4YLM · Structure of PvcB, an Fe, alpha-ketoglutarate dependent oxygenase from an isonitrile… · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt S0I3V6
Elsewhere: RCSB PDB 4YLM · PDBe 4YLM · UniProt S0I3V6

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