MolNFT v1 · #111181 · protein

The crystal structure of a bacterial aryl acylamidase belonging to the amidase signature (as) enzymes family

4YJ6: “The crystal structure of a bacterial aryl acylamidase belonging to the amidase signature (as) enzymes family”. X-ray diffraction, 1 ligand (PO4), 2 pockets (best druggability 0.73). MolNFT v1 #111181 on GenesisL1: 3D structure…

PDB: 4YJ6
Type: protein
Length: 490 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aryl acylamidase
EC: 3.5.1.13
UniProt: C3UWD1
Ligands: PO4
Pockets: 2 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Aryl acylamidase (EC 3.5.1.13)	protein	490	39% helix, 16% strand	C3UWD1

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	514	0.73	0.81	52	PO4
2	109	0.48	0.80	18	empty

Modifications

Observed in the structure: 13 modified (engineered).

Compared structures

4YJ6 · The Crystal Structure of a Bacterial Aryl Acylamidase Belonging to the Amidase signature… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C3UWD1
Elsewhere: RCSB PDB 4YJ6 · PDBe 4YJ6 · UniProt C3UWD1

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