MolNFT v1 · #11118 · protein

Crystal structure of DIAP1-BIR2/GRIM

1JD5 · Apoptosis 1 inhibitor: “Crystal structure of DIAP1-BIR2/GRIM”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #11118 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1JD5
Type: protein
Length: 113 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Apoptosis 1 inhibitor; Cell death protein grim
UniProt: Q24306, Q24570
Ligands: ZN

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Apoptosis 1 inhibitor	protein	105	50% helix, 9% strand	Q24306
B	Cell death protein grim	protein	8	0% helix, 50% strand	Q24570

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 490 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

1JD5 · Crystal Structure of DIAP1-BIR2/GRIM · the same entry in another collection · chain A against A, TM-score 1.00
Q24306 · AlphaFold monomer V2.0 prediction for death-associated inhibitor of apoptosis 1 (Q24306) · a predicted model of the same protein · chain A against A, TM-score 0.90
Q24570 · AlphaFold monomer V2.0 prediction for cell death protein grim (Q24570) · a predicted model of the same protein · chain B against A, TM-score 0.44

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q24306
Every structure of UniProt Q24570
Elsewhere: RCSB PDB 1JD5 · PDBe 1JD5 · UniProt Q24306 · UniProt Q24570

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