MolNFT v1 · #111106 · protein
Crystal structure of a DUF4309 family protein (yjgb) from bacillus subtilis subsp. subtilis str. 168 at 2.13 a resolution
4YGT · Uncharacterized protein yjgb: “Crystal structure of a DUF4309 family protein (yjgb) from bacillus subtilis subsp. subtilis str. 168 at 2.13…”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.33). MolNFT v1 #111106…
- PDB
- 4YGT
- Type
- protein
- Length
- 148 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein yjgb
- UniProt
- O34960
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein yjgb | protein | 148 | 26% helix, 34% strand | O34960 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.33 | 0.75 | 16 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 4YGT · Crystal structure of a DUF4309 family protein (YjgB) from Bacillus subtilis subsp.… · the same entry in another collection · chain A against A, TM-score 1.00
- O34960 · AlphaFold monomer V2.0 prediction for uncharacterized protein yjgb (O34960) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34960
- Elsewhere: RCSB PDB 4YGT · PDBe 4YGT · UniProt O34960
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