MolNFT v1 · #111103 · protein

Crystal structure of had phosphatase from thermococcus onnurineus

4YGQ · Hydrolase: “Crystal structure of had phosphatase from thermococcus onnurineus”. X-ray diffraction, 1 pocket (best druggability 0.59). MolNFT v1 #111103 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4YGQ
Type: protein
Length: 215 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hydrolase
UniProt: B6YTD6
Pockets: 1 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hydrolase	protein	215	50% helix, 14% strand	B6YTD6

Ligands and binding sites

TBU · Tertiary-butyl alcohol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	300	0.59	0.78	31	TBU

Compared structures

4YGQ · Crystal structure of HAD phosphatase from Thermococcus onnurineus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B6YTD6
Elsewhere: RCSB PDB 4YGQ · PDBe 4YGQ · UniProt B6YTD6

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