MolNFT v1 · #111076 · protein
Structural basis of glycan recognition in neonate-specific rotaviruses
4YFW · Outer capsid protein VP4: “Structural basis of glycan recognition in neonate-specific rotaviruses”. X-ray diffraction, 1 pocket (best druggability 0.60). MolNFT v1 #111076 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4YFW
- Type
- protein
- Length
- 322 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer capsid protein VP4
- UniProt
- B6RGK2
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Outer capsid protein VP4 | protein | 161 | 8% helix, 52% strand | B6RGK2 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.60 | 0.83 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 475 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4YFW · Structural basis of glycan recognition in neonate-specific rotaviruses · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6RGK2
- Elsewhere: RCSB PDB 4YFW · PDBe 4YFW · UniProt B6RGK2
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