MolNFT v1 · #111031 · protein

Crystal structure of MG2+ ion containing hemopexin fold from kabuli chana (chickpea white) at 2.45A resolution reveals a structural basis of metal ion transport

4YEH · Lectin: “Crystal structure of MG2+ ion containing hemopexin fold from kabuli chana (chickpea white) at 2.45A…”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.43). MolNFT v1 #111031 on GenesisL1: 3D structure…

PDB: 4YEH
Type: protein
Length: 448 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin
UniProt: G1K3R9
Ligands: MG
Pockets: 2 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Lectin	protein	224	18% helix, 40% strand	G1K3R9

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.43	0.83	16	empty
2	67	0.38	0.78	15	empty

Interfaces

1 interface between chains.

A–B · 705 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

4YEH · Crystal structure of Mg2+ ion containing hemopexin fold from Kabuli chana (chickpea… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G1K3R9
Elsewhere: RCSB PDB 4YEH · PDBe 4YEH · UniProt G1K3R9

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