MolNFT v1 · #111022 · protein

The crystal structure of the Y57H mutant of human glnrs

4YE8 · Glutamine--tRNA ligase: “The crystal structure of the Y57H mutant of human glnrs”. X-ray diffraction, 11 pockets (best druggability 0.68). MolNFT v1 #111022 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4YE8
Type: protein
Length: 709 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glutamine--tRNA ligase
EC: 6.1.1.18
UniProt: P47897
Pockets: 11 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glutamine--tRNA ligase (EC 6.1.1.18)	protein	709	34% helix, 13% strand	P47897

Pockets

11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	537	0.68	0.78	51	empty
2	88	0.64	0.90	23	empty
3	402	0.63	0.77	51	empty
4	368	0.58	0.75	40	empty
5	50	0.55	0.90	13	empty

Compared structures

4YE8 · The crystal structure of the Y57H mutant of human GlnRS · the same entry in another collection · chain A against A, TM-score 1.00
P47897 · AlphaFold monomer V2.0 prediction for glutamine--tRNA ligase (P47897) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P47897
Elsewhere: RCSB PDB 4YE8 · PDBe 4YE8 · UniProt P47897

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