MolNFT v1 · #111003 · protein
Crystal structure of N-terminal PDZ domain of zasp in complex with myotilin C-terminal peptide.
4YDP · Lim domain-binding protein 3: “Crystal structure of N-terminal PDZ domain of zasp in complex with myotilin C-terminal peptide.”. X-ray diffraction, 1 pocket (best druggability 0.51). MolNFT v1 #111003 on GenesisL1: 3D structure…
- PDB
- 4YDP
- Type
- protein
- Length
- 172 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lim domain-binding protein 3
- UniProt
- O75112
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lim domain-binding protein 3 | protein | 86 | 19% helix, 38% strand | O75112 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.51 | 0.76 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 252 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 4YDP · Crystal structure of N-terminal PDZ domain of ZASP in complex with myotilin C-terminal… · the same entry in another collection · chain A against A, TM-score 1.00
- O75112 · AlphaFold monomer V2.0 prediction for lim domain-binding protein 3 (O75112) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75112
- Elsewhere: RCSB PDB 4YDP · PDBe 4YDP · UniProt O75112
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