MolNFT v1 · #110927 · protein

Aspartic proteinase SAPP2 secreted from candida parapsilosis at 1.25 a resolution

4YBF · Candidapepsin-2: “Aspartic proteinase SAPP2 secreted from candida parapsilosis at 1.25 a resolution”. X-ray diffraction, 2 pockets (best druggability 0.62). MolNFT v1 #110927 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 4YBF
Type: protein
Length: 334 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Candidapepsin-2
UniProt: G8B6Y8
Pockets: 2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Candidapepsin-2	protein	334	12% helix, 49% strand	G8B6Y8

Ligands and binding sites

PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	515	0.62	0.75	43	PEG
2	63	0.31	0.75	18	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

4YBF · Aspartic Proteinase Sapp2 Secreted from Candida Parapsilosis at 1.25 A Resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G8B6Y8
Elsewhere: RCSB PDB 4YBF · PDBe 4YBF · UniProt G8B6Y8

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