MolNFT v1 · #110871 · protein
PA3825-eal metal-free-apo structure - manganese co-crystallisation
4Y9O: “PA3825-eal metal-free-apo structure - manganese co-crystallisation”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.61). MolNFT v1 #110871 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4Y9O
- Type
- protein
- Length
- 255 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PA3825-eal
- UniProt
- Q9HXH7
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PA3825-eal | protein | 255 | 48% helix, 21% strand | Q9HXH7 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 373 | 0.61 | 0.77 | 43 | empty |
Compared structures
- 4Y9O · PA3825-EAL Metal-Free-Apo Structure - Manganese Co-crystallisation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXH7
- Elsewhere: RCSB PDB 4Y9O · PDBe 4Y9O · UniProt Q9HXH7
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