MolNFT v1 · #11065 · protein

Crystal structure of the first nucelotide binding domain of clpb

1JBK · Clpb protein: “Crystal structure of the first nucelotide binding domain of clpb”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.39). MolNFT v1 #11065 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1JBK
Type: protein
Length: 189 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Clpb protein
UniProt: P63284
Ligands: MG
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Clpb protein	protein	189	49% helix, 15% strand	P63284

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.39	0.77	16	empty

Compared structures

1JBK · Crystal Structure of the First Nucelotide Binding Domain of ClpB · the same entry in another collection · chain A against A, TM-score 1.00
P63284 · AlphaFold monomer V2.0 prediction for chaperone protein clpb (P63284) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63284
Elsewhere: RCSB PDB 1JBK · PDBe 1JBK · UniProt P63284

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.