MolNFT v1 · #110608 · protein
Vis toxin, an ADP-ribosyltransferase from vibrio splendidus
4Y1W · NAD(+)--arginine ADP-ribosyltransferase vis: “Vis toxin, an ADP-ribosyltransferase from vibrio splendidus”. X-ray diffraction, 2 pockets (best druggability 0.62). MolNFT v1 #110608 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4Y1W
- Type
- protein
- Length
- 217 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NAD(+)--arginine ADP-ribosyltransferase vis
- EC
- 2.4.2.31
- UniProt
- A3UNN4
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD(+)--arginine ADP-ribosyltransferase vis (EC 2.4.2.31) | protein | 217 | 36% helix, 27% strand | A3UNN4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 293 | 0.62 | 0.79 | 32 | empty |
| 2 | 84 | 0.39 | 0.77 | 17 | empty |
Compared structures
- 4Y1W · Vis toxin, an ADP-ribosyltransferase from Vibrio Splendidus · the same entry in another collection · chain A against A, TM-score 1.00
- A3UNN4 · AlphaFold monomer V2.0 prediction for putative NAD(+)--arginine ADP- ribosyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3UNN4
- Elsewhere: RCSB PDB 4Y1W · PDBe 4Y1W · UniProt A3UNN4
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