MolNFT v1 · #110590 · protein

SAV1875-C105D

4Y1E · Uncharacterized protein SAV1875: “SAV1875-C105D”. X-ray diffraction, 2 pockets (best druggability 0.33). MolNFT v1 #110590 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4Y1E
Type: protein
Length: 342 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein SAV1875
UniProt: P0A0K0
Pockets: 2 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein SAV1875	protein	171	36% helix, 23% strand	P0A0K0

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.33	0.75	17	empty
2	53	0.31	0.77	15	empty

Interfaces

1 interface between chains.

A–B · 865 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

4Y1E · SAV1875-C105D · the same entry in another collection · chain A against A, TM-score 1.00
P0A0K0 · AlphaFold monomer V2.0 prediction for uncharacterized protein SAV1875 (P0A0K0) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A0K0
Elsewhere: RCSB PDB 4Y1E · PDBe 4Y1E · UniProt P0A0K0

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