MolNFT v1 · #110468 · protein

Crystal structure of class 1 cytochrome mtod from sideroxydans lithotrophicus es-1

4XXL · Cytochrome C class I: “Crystal structure of class 1 cytochrome mtod from sideroxydans lithotrophicus es-1”. X-ray diffraction, 1 ligand (HEC), 1 pocket (best druggability 0.61). MolNFT v1 #110468 on GenesisL1: 3D structure, binding…

PDB: 4XXL
Type: protein
Length: 92 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C class I
UniProt: D5CN26
Ligands: HEC
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C class I	protein	92	49% helix, 7% strand	D5CN26

Ligands and binding sites

HEC · Heme C · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	235	0.61	0.80	30	HEC

Modifications

Observed in the structure: 2 cofactor (heme c attachment).

Compared structures

4XXL · Crystal structure of Class 1 cytochrome MtoD from Sideroxydans lithotrophicus ES-1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D5CN26
Elsewhere: RCSB PDB 4XXL · PDBe 4XXL · UniProt D5CN26

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