MolNFT v1 · #11009 · protein

Crystal structure of mannanase 26A from pseudomonas cellulosa

1J9Y · Mannanase a: “Crystal structure of mannanase 26A from pseudomonas cellulosa”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.48). MolNFT v1 #11009 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1J9Y
Type: protein
Length: 337 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mannanase a
EC: 3.2.1.78
UniProt: P49424
Ligands: ZN
Pockets: 2 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mannanase a (EC 3.2.1.78)	protein	337	36% helix, 14% strand	P49424

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	205	0.48	0.74	27	empty
2	82	0.40	0.78	24	empty

Compared structures

1J9Y · Crystal structure of mannanase 26A from Pseudomonas cellulosa · the same entry in another collection · chain A against A, TM-score 1.00
P49424 · AlphaFold monomer V2.0 prediction for mannan endo-1,4-beta- mannosidase (P49424) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P49424
Elsewhere: RCSB PDB 1J9Y · PDBe 1J9Y · UniProt P49424

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