MolNFT v1 · #110070 · protein

Tailspike protein double mutant D339A/E372A of E. COLI bacteriophage HK620

4XLH · Tail spike protein: “Tailspike protein double mutant D339A/E372A of E. COLI bacteriophage HK620”. X-ray diffraction, 1 ligand (NA), 3 pockets (best druggability 0.47). MolNFT v1 #110070 on GenesisL1: 3D structure, binding sites and…

PDB: 4XLH
Type: protein
Length: 599 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tail spike protein
UniProt: Q9AYY6
Ligands: NA
Pockets: 3 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tail spike protein	protein	599	10% helix, 43% strand	Q9AYY6

Ligands and binding sites

NA · Sodium ion · metal · chains A
FMT · Formic acid · additive · 5 copies · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	193	0.47	0.76	25	empty
2	123	0.41	0.76	24	empty
3	91	0.34	0.74	17	empty

Compared structures

4XLH · Tailspike protein double mutant D339A/E372A of E. coli bacteriophage HK620 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9AYY6
Elsewhere: RCSB PDB 4XLH · PDBe 4XLH · UniProt Q9AYY6

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