MolNFT v1 · #110063 · protein
Tailspike protein mutant D339A of E. COLI bacteriophage HK620
4XL9 · Tail spike protein: “Tailspike protein mutant D339A of E. COLI bacteriophage HK620”. X-ray diffraction, 1 ligand (NA), 3 pockets (best druggability 0.48). MolNFT v1 #110063 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4XL9
- Type
- protein
- Length
- 597 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tail spike protein
- UniProt
- Q9AYY6
- Ligands
- NA
- Pockets
- 3 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tail spike protein | protein | 597 | 9% helix, 44% strand | Q9AYY6 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
- FMT · Formic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 201 | 0.48 | 0.75 | 36 | empty |
| 2 | 119 | 0.41 | 0.75 | 18 | empty |
| 3 | 82 | 0.33 | 0.74 | 17 | empty |
Compared structures
- 4XL9 · Tailspike protein mutant D339A of E. coli bacteriophage HK620 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AYY6
- Elsewhere: RCSB PDB 4XL9 · PDBe 4XL9 · UniProt Q9AYY6
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