MolNFT v1 · #110033 · protein
Crystal structure of genomes uncoupled 4 (GUN4) in complex with magnesium deuteroporphyrin IX
4XKC · YCF53-like protein: “Crystal structure of genomes uncoupled 4 (GUN4) in complex with magnesium deuteroporphyrin IX”. X-ray diffraction, 1 ligand (MD9), 1 pocket (best druggability 0.67). MolNFT v1 #110033 on GenesisL1: 3D structure…
- PDB
- 4XKC
- Type
- protein
- Length
- 225 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- YCF53-like protein
- UniProt
- P72583
- Ligands
- MD9
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | YCF53-like protein | protein | 225 | 56% helix, 2% strand | P72583 |
Ligands and binding sites
- MD9 · Magnesium deuteroporphyrin IX · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 184 | 0.67 | 0.86 | 28 | MD9 |
Compared structures
- 4XKC · Crystal Structure of GENOMES UNCOUPLED 4 (GUN4) in Complex with Magnesium… · the same entry in another collection · chain A against A, TM-score 1.00
- P72583 · AlphaFold monomer V2.0 prediction for YCF53-like protein (P72583) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P72583
- Elsewhere: RCSB PDB 4XKC · PDBe 4XKC · UniProt P72583
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